Charming the Flaming Fist Mercenary who is pursuing Viconia, creates a journal entry "Murder Most Foul". This appears as a "Quest". It should be "Info". I can fix this in EEKeeper. Otherwise it just stays an open quest forever. Just making you guys aware for a future update. This fix, coupled with the Simple Journal Fixes (https://forums.beamdog.com/discussion/63785/simple-journal-fixes-bg1ee-sod-bg2ee) have pretty much all but repaired my journal at last.
*Update* Found Another - Charming the Flaming Fist Mercenary who stops you on the road south of Beregost and accuses you of banditry, prompts dialogue about the Flaming Fist desperately needing Iron. This appears under "Rising Tensions with Amn" but does not appear in that quest string. I show this as "Quest" already and not "Info" but it doesn't resolve properly.
Also noticing some Journal Entries vanishing upon progressing from Chapter 2 to Chapter 3. Specifically, some of the "Troubles in the Region" entries. Two examples are Berrun Ghastkill's Entry requesting to clean out the mines, and the entry that the rash of banditry in the north prevents Amn from doing much.