Yes, NI fully supports PST:EE. I have no experience with modding Android, but if it's possible for BG:EE it will most likely be possible for PST:EE as well.
If you want to solve this issue yourself with NI then you can do it by enabling flags bit 15 (Can sell critical) in all available store files of the game. Stores you have already visited in your current run will not be affected by this change though.
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