Depends. If you bought directly from Beamdog, BGEE+SoD are packaged together. So just install your mods in the SoD game folder adn you're good to go. I'm not sure if its different for Steam or GoG, besides the extra step of running Modmerge.
@Lathspellguest, I agree with @ThacoBell. Just covering off on the 'not sure' bit. I have the GoG version and only difference is running Modmerge. When ever I setup mods for the Android version (which is a standalone SoD game - no BGEE), I setup all the mods in the PC BGEE/SOD game then use that as the basis for the modded Android game.
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