Current Behavior: Items that appear in the bottom of the screen as "journal updates" aren't appearing. I've looked in the "Journal", "Quest", and "Done Quest" tabs and in more than a few instances found nothing.
I will update this as I can with more specific examples, but it has occurred numerous times.
I'm in the city of Baldur's Gate at the moment, but don't let that fool you into thinking this only started recently.
For example: While talking to a commoner in Baldur's Gate he mentioned that "Duke Eltan's been mobilising the flaming fist." It says at the bottom that my journal has been updated under the headline "rising tensions with amn", but as I see it now my journal only has two entries for chapter five. One that discusses running into Elminster again, and the second is describing how I dealt a terrible blow to the iron throne and now must go to Baldur's Gate. It is also not listed or mentioned in any other chapter.
Expected behaviour: When a journal entry is listed as being added, it should appear at least under the "journal" section of the journal screen.